PDBsum entry 5n4t Go to PDB code:  Tunnel analysis for: 5n4t calculated with MOLE 2.0 PDB id 5n4t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.43 18.3 -1.00 -0.44 15.6 79 2 1 1 1 1 1 0  R59 304 B 2 1.39 1.39 22.0 -2.05 0.05 21.6 69 3 1 1 0 3 0 1  R59 304 B 3 1.39 1.39 28.1 -2.00 -0.34 18.9 85 5 0 2 1 1 0 1  R59 304 B 4 1.39 1.39 39.7 -1.46 -0.32 16.0 90 6 0 4 2 1 0 1  R59 304 B 5 1.39 1.39 40.2 -1.66 -0.19 21.4 85 7 0 2 1 1 0 1  R59 304 B 6 1.39 1.39 44.8 -1.75 -0.29 18.2 82 5 2 3 2 2 1 1  R59 504 A R59 304 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.