PDBsum entry 5lsu

Transferase

PDB id: 5lsu

Contents

Protein chains

231 a.a.

Ligands

SAM ×2

Metals

_ZN ×6

Waters ×528

PDB id:

5lsu

Name:

Transferase

Title:

Structure of the epigenetic oncogene mmset and inhibition by n-alkyl sinefungin derivatives

Structure:

Histone-lysine n-methyltransferase nsd2. Chain: a, b. Synonym: multiple myeloma set domain-containing protein,mmset,nuclear set domain-containing protein 2,nsd2,protein trithorax-5,wolf- hirschhorn syndrome candidate 1 protein,whsc1. Engineered: yes. Mutation: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: whsc1, kiaa1090, mmset, nsd2, trx5. Expressed in: escherichia coli. Expression_system_taxid: 469008.

Resolution:

2.14Å R-factor: 0.175 R-free: 0.238

Authors:

D.Tisi,P.Pathuri,T.Heightman

Key ref:

D.Tisi et al. (2016). Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives. Acs Chem Biol, 11, 3093-3105. PubMed id: 27571355 DOI: 10.1021/acschembio.6b00308

Date:

05-Sep-16 Release date: 05-Oct-16

Protein chains

O96028  (NSD2_HUMAN) -  Histone-lysine N-methyltransferase NSD2 from Homo sapiens

Seq: 1365 a.a.

Struc: 231 a.a.*

* PDB and UniProt seqs differ at 5 residue positions (black crosses)

Enzyme reactions

• Enzyme class: E.C.2.1.1.357 - [histone H3]-lysine(36) N-dimethyltransferase.
• Reaction: L-lysyl₃₆-[histone H3] + 2 S-adenosyl-L-methionine = N₆,N₆- dimethyl-L-lysyl₃₆-[histone H3] + 2 S-adenosyl-L-homocysteine + 2 H⁺

L-lysyl(36)-[histone H3] + 2 × S-adenosyl-L-methionine (Bound ligand (Het Group name = SAM) corresponds exactly) = N(6),N(6)- dimethyl-L-lysyl(36)-[histone H3] + 2 × S-adenosyl-L-homocysteine + 2 × H(+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

Added reference

DOI no: 10.1021/acschembio.6b00308

Acs Chem Biol 11:3093-3105 (2016)

PubMed id: 27571355

Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.

D.Tisi, E.Chiarparin, E.Tamanini, P.Pathuri, J.E.Coyle, A.Hold, F.P.Holding, N.Amin, A.C.Martin, S.J.Rich, V.Berdini, J.Yon, P.Acklam, R.Burke, L.Drouin, J.E.Harmer, F.Jeganathan, R.L.van Montfort, Y.Newbatt, M.Tortorici, M.Westlake, A.Wood, S.Hoelder, T.D.Heightman.

ABSTRACT

No abstract given.