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PDBsum entry 5lrs

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 5lrs calculated with MOLE 2.0 PDB id
5lrs
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.18 2.81 60.2 -1.22 -0.68 10.2 97 4 0 6 2 0 0 0  DT 1 C DT 2 C DG 3 C DT 4 C DT 5 C DA 6 C DT -
10 D DC -
9 D DA 1 D DT 2 D DG 3 D DT 4 D DT 5 D DA 6 D
2 1.30 1.64 72.7 -1.42 -0.44 9.0 84 2 3 10 2 4 2 0  DT 4 C DT 5 C DA 6 C DT -10 D DC -9 D
3 1.28 1.62 108.9 -1.28 -0.55 9.4 84 5 3 12 2 5 2 0  DG -10 C DC -
9 C DT 1 C DT 2 C DG 3 C DT 4 C DA 1 D DT 2 D DG
3 D DT 4 D DT 5 D DA 6 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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