 |
PDBsum entry 5lj3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5lj3 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5lj3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.17 |
1.15 |
95.1 |
-1.60 |
-0.45 |
18.7 |
76 |
|
15 |
1 |
3 |
2 |
4 |
2 |
0 |
|
A -2 E G -
1 E U 2 I G 5 I C 37 U A 40 V A 41 V A 42 V C 43
V C 68 V C 69 V G 77 V G 78 V A 82 V
|
 |
|
2 |
 |
1.17 |
1.15 |
100.8 |
-1.25 |
-0.72 |
14.2 |
88 |
11 |
5 |
3 |
2 |
0 |
0 |
0 |
A -2 E G -
1 E MG 1001 E G 1 I U 2 I A 72 I A 73 I A 74 I U
97 U A 59 V G 60 V C 61 V G 77 V G 78 V A 79 V U
80 V MG 201 V A 27 Z U 28 Z C 29 Z A 30 Z A 31 Z
|
|
3 |
 |
1.20 |
1.22 |
113.5 |
-0.95 |
-0.67 |
9.1 |
83 |
5 |
0 |
2 |
1 |
1 |
0 |
0 |
A -2 E G -
1 E G 1 I U 2 I A 3 I A 70 I A 51 V G 52 V G 78 V
A 79 V U 80 V A 82 V A 83 V C 85 V G 86 V U 88 V
C 92 V A 93 V A 94 V A 95 V G 96 V A 97 V G 3 Z A
4 Z A 5 Z U 6 Z C 7 Z U 8 Z C 9 Z G 13 Z C 14 Z C
15 Z U 16 Z U 18 Z UNK 76 x UNK 77 x UNK 80 x UNK
81 x UNK 84 x
|
|
4 |
 |
1.20 |
1.30 |
116.6 |
-1.40 |
-0.53 |
19.0 |
83 |
13 |
4 |
7 |
11 |
1 |
3 |
0 |
A -2 E G -
1 E G 1 I U 2 I A 3 I U 4 I U 61 I U 63 I U 64 I
U 65 I U 68 I A 69 I A 70 I A 49 V G 50 V A 51 V
G 78 V A 79 V U 80 V C 41 Z U 42 Z
|
|
5 |
 |
1.21 |
1.31 |
121.9 |
-1.17 |
-0.60 |
14.4 |
86 |
10 |
8 |
7 |
5 |
1 |
3 |
0 |
A -2 E G -
1 E MG 1001 E G 1 I U 2 I A 72 I A 73 I A 74 I U
97 U A 59 V G 60 V C 61 V G 77 V G 78 V A 79 V U
80 V MG 201 V U 17 Z A 25 Z A 27 Z U 28 Z C 29 Z
A 30 Z A 31 Z
|
|
6 |
 |
1.40 |
1.42 |
15.8 |
0.85 |
0.17 |
1.9 |
70 |
0 |
0 |
0 |
4 |
4 |
1 |
0 |
|
|
7 |
 |
1.33 |
1.38 |
23.7 |
-0.24 |
0.29 |
11.0 |
57 |
1 |
1 |
0 |
4 |
6 |
0 |
1 |
|
|
8 |
 |
1.40 |
1.41 |
15.7 |
-0.13 |
-0.52 |
8.1 |
86 |
0 |
2 |
2 |
3 |
0 |
0 |
0 |
|
 |
9 |
 |
1.09 |
2.36 |
18.7 |
-1.01 |
-0.14 |
26.6 |
77 |
3 |
1 |
0 |
5 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program