PDBsum entry 5ld2 Go to PDB code:  Pore analysis for: 5ld2 calculated with MOLE 2.0 PDB id 5ld2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 3.46 25.1 -0.58 -0.05 18.8 87 4 4 2 6 0 0 0   2 3.02 3.20 51.5 -2.21 -0.62 24.6 87 6 4 4 2 1 0 0  DT 15 X DA 16 X DA 67 X DT 68 X DT 69 X DT 70 X 3 3.11 3.18 53.6 -2.09 -0.67 18.0 84 2 5 3 2 0 3 0  DA 65 X 4 2.11 2.12 65.3 -1.61 -0.51 19.7 83 7 6 5 5 3 1 0  DA 16 X DT 68 X 5 1.34 1.97 73.4 -1.66 -0.58 23.6 85 8 8 9 5 2 0 0  DT 70 X 6 1.30 1.54 73.1 -1.72 -0.61 16.3 80 3 6 7 5 1 3 0   7 1.31 1.98 80.1 -2.16 -0.71 21.6 88 8 7 14 4 1 1 0  DA 65 X DG 66 X DT 70 X 8 1.83 2.07 89.5 -1.06 -0.41 18.2 83 7 7 4 8 0 1 0   9 1.54 1.56 106.6 -2.26 -0.66 30.2 84 9 15 6 5 1 2 0  DT 7 X DT 8 X 10 1.77 1.78 114.7 -2.15 -0.62 27.9 81 11 14 5 6 1 3 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B 11 1.57 1.87 125.6 -1.64 -0.42 20.4 81 15 10 10 8 3 4 0  DT 7 X DT 8 X DT 9 X DT 10 X DT 11 X DT 12 X DT 13 X DT 63 X DT 64 X 12 1.49 1.67 125.5 -2.14 -0.68 22.9 85 10 11 11 7 1 2 0  DT 7 X DT 8 X DT 9 X DT 10 X DT 11 X DT 15 X DA 16 X DA 67 X DT 68 X 13 2.16 4.70 129.6 -2.44 -0.68 30.4 85 12 16 10 10 0 1 0  DT 8 X DT 9 X DT 10 X DT 11 X DT 15 X DA 16 X DA 67 X DT 68 X 14 1.81 1.99 129.3 -2.42 -0.56 33.6 84 14 21 9 11 1 2 0   15 1.61 1.83 131.3 -1.99 -0.74 19.1 86 9 13 17 7 1 2 0  DT 7 X DT 8 X DT 9 X DT 10 X DT 11 X DA 65 X DG 66 X 16 1.40 1.47 136.2 -2.17 -0.69 22.8 86 15 13 17 6 2 2 0  DT 7 X DT 8 X DT 9 X DT 10 X DT 11 X DT 70 X 17 2.29 4.64 135.4 -2.30 -0.72 26.2 86 10 18 16 10 0 1 0  DT 8 X DT 9 X DT 10 X DT 11 X DA 65 X DG 66 X 18 1.41 1.59 142.7 -2.11 -0.64 23.8 81 14 14 8 4 2 5 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B DT 7 X DT 8 X 19 1.77 1.77 146.4 -1.64 -0.48 17.8 79 15 12 14 11 1 5 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B 20 1.48 1.86 159.0 -1.65 -0.50 20.2 83 15 13 14 11 2 2 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B DT 70 X 21 1.58 1.70 161.2 -1.95 -0.65 21.0 85 14 13 18 8 3 2 0  DT 7 X DT 8 X DT 9 X DT 10 X DT 11 X DT 70 X 22 1.77 1.77 162.6 -1.58 -0.52 20.2 81 13 12 13 13 2 2 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B 23 1.21 1.42 165.9 -1.72 -0.53 22.8 83 12 20 11 9 3 3 0  DT 7 X DT 8 X 24 1.80 2.01 175.5 -1.84 -0.52 23.8 81 17 21 16 13 1 4 0   25 1.88 1.82 190.7 -1.64 -0.53 17.0 83 14 12 20 13 2 3 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B DA 65 X DG 66 X DT 70 X 26 2.19 3.13 191.7 -1.83 -0.57 26.4 82 15 21 15 15 2 1 0   27 1.26 1.30 196.8 -1.36 -0.53 12.4 82 10 11 18 13 2 8 1  UNK 913 B UNK 914 B UNK 917 B UNK 918 B UNK 919 B UNK 925 B 28 1.20 1.32 204.9 -1.23 -0.47 16.3 83 12 15 21 17 2 5 0   29 1.31 1.31 220.4 -1.64 -0.57 20.0 83 12 20 18 15 2 7 0   30 1.29 1.35 233.0 -1.30 -0.48 14.2 85 13 15 28 17 2 6 0  DA 65 X DG 66 X DT 70 X Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.