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PDBsum entry 5lb5

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5lb5 calculated with MOLE 2.0 PDB id
5lb5
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.73 2.92 33.2 -0.62 -0.30 13.5 87 5 0 1 6 1 1 0  
2 1.73 2.58 41.8 -0.63 -0.33 5.1 83 1 0 2 5 2 3 1  
3 2.24 2.52 42.0 -0.94 -0.15 17.0 85 4 3 3 6 2 0 0  
4 2.71 4.43 42.9 -2.14 -0.53 21.1 79 5 3 4 4 2 2 0  
5 1.57 1.87 43.3 -1.73 -0.27 21.9 73 6 4 2 4 2 1 1  
6 2.19 2.40 44.9 -2.02 -0.55 23.7 83 5 3 1 2 1 0 0  
7 2.76 3.10 77.0 -1.61 -0.40 27.4 86 9 6 4 7 0 0 0  
8 1.61 1.80 99.5 -1.66 -0.25 26.1 76 13 9 4 7 2 2 2  
9 3.48 3.58 40.5 -0.72 -0.02 24.9 84 7 2 2 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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