PDBsum entry 5l5c Go to PDB code:  Tunnel analysis for: 5l5c calculated with MOLE 2.0 PDB id 5l5c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.42 83.5 -0.06 0.03 19.1 77 5 7 1 14 4 0 0   2 1.40 1.45 16.6 0.97 0.44 1.5 80 0 0 3 1 2 5 0   3 1.36 1.45 19.5 0.71 0.13 1.7 81 0 0 4 6 1 4 0   4 1.26 2.59 24.4 2.26 0.72 0.9 71 2 0 2 6 3 1 0   5 1.46 1.63 17.4 -0.83 -0.42 8.2 96 1 1 4 3 0 0 0   6 1.21 1.41 17.0 -0.54 0.04 15.6 71 2 0 1 2 2 0 1   7 1.15 1.46 15.4 -1.75 -0.77 15.7 82 1 1 2 0 0 2 0   8 2.10 2.33 21.2 -1.32 -0.40 11.5 77 1 0 2 1 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.