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PDBsum entry 5kup
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Tunnel analysis for: 5kup calculated with  MOLE 2.0
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PDB id
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5kup
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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1 tunnel,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.74 |
2.06 |
23.8 |
-0.23 |
-0.24 |
15.6 |
85 |
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2 |
1 |
2 |
5 |
1 |
0 |
0 |
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6XL 706 A
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2 |
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1.74 |
2.05 |
24.3 |
-0.17 |
-0.21 |
15.8 |
85 |
2 |
1 |
2 |
6 |
1 |
0 |
0 |
6XL 706 A
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3 |
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1.74 |
2.04 |
27.9 |
-0.04 |
-0.15 |
15.9 |
81 |
2 |
2 |
2 |
6 |
1 |
0 |
0 |
6XL 706 A
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4 |
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1.73 |
2.04 |
28.5 |
0.03 |
-0.11 |
16.0 |
82 |
2 |
2 |
2 |
7 |
1 |
0 |
0 |
6XL 706 A
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5 |
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1.42 |
1.42 |
21.8 |
0.15 |
0.02 |
6.1 |
80 |
2 |
1 |
3 |
2 |
3 |
2 |
0 |
GOL 704 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program