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PDBsum entry 5kuh
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Pore analysis for: 5kuh calculated with MOLE 2.0 PDB id
5kuh
Pores calculated on whole structure Pores calculated excluding ligands
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40 pores, coloured by radius 37 pores, coloured by radius 37 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.09 2.95 25.9 -0.03 -0.02 8.6 81 3 1 1 6 3 0 0  
2 2.09 2.76 25.9 0.13 0.05 8.7 81 3 1 1 6 3 0 0  
3 1.63 1.66 26.7 1.15 0.64 1.4 73 0 0 0 8 4 0 0  
4 1.62 1.66 27.1 1.07 0.53 1.9 71 1 0 0 8 5 0 0  
5 1.99 2.39 29.4 1.11 0.59 1.4 74 0 0 0 9 4 1 0  
6 1.40 1.41 31.4 1.65 0.61 1.8 75 2 0 1 10 3 1 0  
7 1.38 1.66 31.8 1.08 0.31 7.4 76 1 1 0 9 2 1 0  
8 1.89 2.09 31.9 1.35 0.55 4.4 79 3 0 1 10 3 1 0  
9 1.89 2.12 32.0 0.86 0.37 7.0 79 2 1 1 10 3 1 0  
10 1.65 1.65 34.5 1.20 0.47 5.4 81 2 1 1 11 3 0 0  
11 1.63 1.67 34.6 0.69 0.31 2.7 73 1 1 0 8 4 0 0  
12 2.00 2.44 36.0 1.16 0.38 5.0 79 2 1 1 11 4 1 0  
13 1.97 2.41 36.6 0.59 0.35 3.5 73 2 0 0 9 4 1 0  
14 2.12 2.14 36.5 0.00 -0.25 9.9 77 1 3 1 6 2 1 0  
15 2.02 2.38 39.9 0.92 0.34 5.6 78 3 1 1 11 4 1 0  
16 1.63 1.73 40.4 1.08 0.35 4.9 81 2 2 1 11 3 0 0  
17 1.37 1.50 42.6 0.77 0.19 8.9 75 2 1 0 11 2 1 0  
18 1.73 2.12 44.5 0.85 0.29 8.9 83 5 1 1 10 2 1 0  
19 1.40 1.40 46.8 0.51 -0.08 8.4 84 2 2 2 9 0 0 0  
20 2.09 2.97 53.1 -0.14 0.08 16.6 80 7 3 3 10 3 0 0  
21 1.83 2.10 53.2 0.81 0.15 6.7 81 2 2 1 13 3 0 0  
22 2.47 2.45 68.3 -1.05 -0.43 15.0 86 7 6 6 6 2 1 0  
23 1.88 2.06 69.7 0.57 0.08 6.7 79 3 3 2 15 5 1 0  
24 2.34 2.33 69.3 -1.40 -0.61 18.7 86 5 7 5 6 1 2 0  
25 2.45 2.45 74.3 -1.03 -0.45 14.8 87 7 6 6 7 2 1 0  
26 2.33 2.33 77.2 -1.36 -0.61 18.6 86 5 8 5 7 1 2 0  
27 1.64 1.71 83.1 0.91 0.22 5.6 78 2 4 2 15 5 1 1  
28 1.65 1.83 25.2 2.28 0.92 0.7 80 0 0 0 9 4 0 0  
29 4.02 4.01 37.9 -0.09 -0.41 11.1 88 2 4 4 2 0 0 0  
30 1.64 1.88 40.5 0.99 0.30 6.7 84 2 2 2 9 4 0 0  
31 1.65 1.88 48.0 1.06 0.32 3.5 82 1 1 1 8 3 0 1  
32 2.15 2.42 49.4 0.53 0.09 5.0 78 1 3 2 5 4 0 1  
33 4.03 4.03 26.8 0.15 -0.40 8.1 88 0 4 3 2 0 0 0  
34 1.64 1.83 30.0 1.70 0.61 2.7 82 0 2 1 9 4 0 0  
35 1.64 1.88 33.1 1.63 0.57 3.0 83 0 2 1 9 4 0 0  
36 1.65 1.84 39.6 1.09 0.39 3.7 83 1 1 1 8 3 0 0  
37 2.16 2.39 51.5 0.18 -0.02 8.1 82 3 3 3 5 4 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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