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PDBsum entry 5ktw

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protein ligands Protein-protein interface(s) links
Transferase PDB id
5ktw

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
114 a.a.
Ligands
6XG ×3
EDO ×8
Waters ×594
PDB id:
5ktw
Name: Transferase
Title: Crebbp bromodomain in complex with cpd 44 (3-((5-acetyl-1- (cyclopropylmethyl)-4,5,6,7-tetrahydro-1h-pyrazolo[4,3-c]pyridin-3- yl)amino)-n-isopropylbenzamide)
Structure: Creb-binding protein. Chain: a, b, c. Fragment: bromodomain (unp residues 1085-1196). Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: crebbp, cbp. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.09Å     R-factor:   0.163     R-free:   0.176
Authors: J.M.Murray,G.Boenig
Key ref: T.D.Crawford et al. (2016). Discovery of a Potent and Selective in Vivo Probe (GNE-272) for the Bromodomains of CBP/EP300. J Med Chem, 59, 10549-10563. PubMed id: 27682507 DOI: 10.1021/acs.jmedchem.6b01022
Date:
12-Jul-16     Release date:   02-Nov-16    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q92793  (CBP_HUMAN) -  CREB-binding protein from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
2442 a.a.
114 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 3 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class 1: E.C.2.3.1.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 2: E.C.2.3.1.48  - histone acetyltransferase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-lysyl-[protein] + acetyl-CoA = N6-acetyl-L-lysyl-[protein] + CoA + H+
L-lysyl-[protein]
+ acetyl-CoA
= N(6)-acetyl-L-lysyl-[protein]
+ CoA
+ H(+)
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1021/acs.jmedchem.6b01022 J Med Chem 59:10549-10563 (2016)
PubMed id: 27682507  
 
 
Discovery of a Potent and Selective in Vivo Probe (GNE-272) for the Bromodomains of CBP/EP300.
T.D.Crawford, F.A.Romero, K.W.Lai, V.Tsui, A.M.Taylor, G.de Leon Boenig, C.L.Noland, J.Murray, J.Ly, E.F.Choo, T.L.Hunsaker, E.W.Chan, M.Merchant, S.Kharbanda, K.E.Gascoigne, S.Kaufman, M.H.Beresini, J.Liao, W.Liu, K.X.Chen, Z.Chen, A.R.Conery, A.Côté, H.Jayaram, Y.Jiang, J.R.Kiefer, T.Kleinheinz, Y.Li, J.Maher, E.Pardo, F.Poy, K.L.Spillane, F.Wang, J.Wang, X.Wei, Z.Xu, Z.Xu, I.Yen, L.Zawadzke, X.Zhu, S.Bellon, R.Cummings, A.G.Cochran, B.K.Albrecht, S.Magnuson.
 
  ABSTRACT  
 
No abstract given.

 

 

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