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PDBsum entry 5kpf

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Top Page protein ligands Protein-protein interface(s) links
Electron transport PDB id
5kpf
Contents
Protein chains
108 a.a.
Ligands
HEC ×2
NO3
6VJ
Waters ×265

References listed in PDB file
Key reference
Title Protein recognition by functionalized sulfonatocalix[4]arenes.
Authors A.M.Doolan, M.L.Rennie, P.B.Crowley.
Ref. Chemistry, 2018, 24, 984-991. [DOI no: 10.1002/chem.201704931]
PubMed id 29125201
Abstract
The interactions of two mono-functionalized sulfonatocalix[4]arenes with cytochrome c were investigated by structural and thermodynamic methods. The replacement of a single sulfonate with either a bromo or a phenyl substituent resulted in altered recognition of cytochrome c as evidenced by X-ray crystallography. The bromo-substituted ligand yielded a new binding mode in which a self-encapsulated calixarene dimer contributed to crystal packing. This ligand also formed a weak halogen bond with the protein. The phenyl-substituted ligand was bound to Lys4 of cytochrome c, in a 1.7 Å resolution crystal structure. A dimeric packing arrangement mediated by ligand-ligand contacts in the crystal suggested a possible assembly mechanism. The different protein recognition properties of these calixarenes are discussed.
PROCHECK
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 Headers

 

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