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PDBsum entry 5kl5
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Tunnel analysis for: 5kl5 calculated with  MOLE 2.0
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PDB id
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5kl5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.23 |
1.64 |
15.3 |
-0.77 |
-0.60 |
10.9 |
92 |
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3 |
0 |
0 |
1 |
0 |
0 |
0 |
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DG 2 B DC 3 B DG 4 B
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2 |
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1.51 |
1.76 |
15.7 |
-2.13 |
-0.37 |
28.8 |
81 |
3 |
1 |
1 |
0 |
1 |
1 |
0 |
DA 2 C 5CM 3 C
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3 |
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1.19 |
1.35 |
16.6 |
-3.05 |
-0.13 |
42.5 |
93 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
DG 8 B 1CC 9 B DG 10 B DT 11 B DG 4 C
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4 |
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1.43 |
1.65 |
16.7 |
-2.00 |
0.02 |
33.1 |
79 |
3 |
0 |
0 |
0 |
1 |
0 |
0 |
DG 8 B 1CC 9 B DG 10 B
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5 |
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1.43 |
1.70 |
18.1 |
-1.94 |
-0.13 |
29.9 |
86 |
4 |
0 |
1 |
0 |
1 |
0 |
0 |
DG 8 B 1CC 9 B DG 10 B DT 11 B
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6 |
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1.18 |
1.56 |
19.2 |
-1.75 |
-0.66 |
19.7 |
88 |
5 |
0 |
1 |
0 |
0 |
0 |
0 |
EDO 504 A DT 5 B DG 6 B DG 7 B
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7 |
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1.54 |
1.82 |
20.4 |
-2.00 |
-0.56 |
25.6 |
85 |
3 |
1 |
1 |
0 |
1 |
0 |
0 |
DA 2 C 5CM 3 C DG 4 C
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8 |
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1.16 |
1.25 |
24.6 |
-1.16 |
-0.63 |
15.7 |
87 |
4 |
1 |
0 |
1 |
0 |
0 |
0 |
DA 1 B DG 2 B DC 3 B DG 4 B
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9 |
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1.22 |
1.35 |
28.7 |
-2.33 |
-0.28 |
32.6 |
79 |
4 |
1 |
1 |
0 |
2 |
1 |
0 |
DG 8 B 1CC 9 B DA 2 C 5CM 3 C DG 4 C
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10 |
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1.11 |
1.64 |
33.4 |
-1.82 |
-0.50 |
22.9 |
83 |
6 |
0 |
1 |
0 |
1 |
0 |
0 |
EDO 504 A DT 5 B DG 6 B DG 7 B DG 8 B 1CC 9 B
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11 |
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1.24 |
1.34 |
35.1 |
-1.80 |
-0.38 |
24.6 |
85 |
6 |
0 |
2 |
0 |
2 |
0 |
0 |
EDO 504 A DG 4 B DT 5 B DG 6 B DG 7 B DG 8 B 1CC
9 B DG 10 B DT 11 B
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12 |
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1.21 |
1.29 |
36.0 |
-1.63 |
-0.36 |
23.1 |
85 |
6 |
0 |
2 |
0 |
2 |
0 |
0 |
EDO 504 A DG 4 B DT 5 B DG 6 B DG 7 B DG 8 B 1CC
9 B DG 10 B DT 11 B
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13 |
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1.14 |
1.18 |
38.0 |
-2.17 |
-0.63 |
27.3 |
83 |
5 |
2 |
1 |
0 |
1 |
1 |
0 |
DA 2 C 5CM 3 C DG 4 C DC 5 C DC 6 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program