PDBsum entry 5kir

Pore analysis for: 5kir calculated with

MOLE 2.0

PDB id

5kir

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.33

2.69

25.3

-1.52

-0.29

12.9

69

1

2

3

1

1

2

2

2

1.93

2.31

25.5

-2.09

-0.22

24.8

84

4

1

2

2

0

0

0

3

1.16

1.20

37.5

1.22

0.22

1.7

71

0

0

4

9

5

0

0

RCX 601 B NAG 1 C

4

1.60

3.44

37.6

0.09

0.16

10.7

78

4

1

1

10

2

1

0

RCX 601 B

5

1.36

1.47

43.3

-0.07

-0.09

8.9

76

3

1

3

6

2

2

0

PO4 608 B NAG 1 C

6

1.17

1.23

50.0

1.12

0.17

1.7

77

0

0

5

9

5

0

0

RCX 601 A NAG 1 D

7

1.51

1.74

56.1

-0.32

-0.16

11.4

78

4

2

6

6

2

2

0

PO4 609 A NAG 1 C

8

1.54

1.71

56.8

-0.37

0.00

13.6

82

6

2

4

11

4

0

0

RCX 601 A GOL 608 A

9

1.49

1.71

63.7

-0.82

-0.16

17.0

78

8

1

5

7

3

2

0

PO4 609 A NAG 1 C

10

1.54

1.71

63.6

-0.83

-0.07

16.1

82

9

2

5

11

3

0

0

RCX 601 A GOL 608 A

11

2.06

2.56

70.2

-1.95

-0.40

17.6

80

9

0

5

3

2

1

0

12

1.53

1.60

97.9

-1.28

-0.22

15.9

82

11

2

7

12

3

0

0

RCX 601 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.