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PDBsum entry 5kea
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Tunnel analysis for: 5kea calculated with  MOLE 2.0
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PDB id
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5kea
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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9 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.41 |
1.41 |
18.6 |
-1.02 |
-0.54 |
17.1 |
83 |
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2 |
1 |
0 |
1 |
1 |
0 |
0 |
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DG 3 B DG 4 B DC 5 B
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2 |
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1.40 |
1.40 |
19.0 |
-0.99 |
-0.45 |
17.9 |
84 |
3 |
1 |
0 |
1 |
1 |
0 |
0 |
DG 3 B DG 4 B DC 5 B
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3 |
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1.42 |
1.57 |
19.2 |
-1.57 |
-0.63 |
18.3 |
82 |
5 |
0 |
1 |
0 |
1 |
0 |
0 |
DG 1 B DA 2 B DG 3 B
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4 |
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1.37 |
1.51 |
19.7 |
-1.54 |
-0.61 |
17.9 |
82 |
5 |
0 |
1 |
0 |
1 |
0 |
0 |
DG 1 B DA 2 B DG 3 B
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5 |
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1.33 |
1.81 |
22.6 |
-1.10 |
-0.57 |
16.6 |
83 |
3 |
1 |
0 |
1 |
1 |
0 |
0 |
DG 3 B DG 4 B DC 5 B DG 6 B DT 9 C
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6 |
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1.34 |
1.82 |
23.0 |
-1.07 |
-0.51 |
17.2 |
84 |
4 |
1 |
0 |
1 |
1 |
0 |
0 |
DG 3 B DG 4 B DC 5 B DG 6 B DT 9 C
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7 |
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1.79 |
1.88 |
15.4 |
-2.53 |
-0.48 |
30.0 |
81 |
4 |
1 |
1 |
0 |
1 |
1 |
0 |
DA 4 C DC 5 C DG 6 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program