spacer
spacer

PDBsum entry 5ke6

Go to PDB code: 
Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 5ke6 calculated with MOLE 2.0 PDB id
5ke6
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.64 1.77 19.6 -2.40 -0.64 26.7 86 5 1 1 0 0 0 0  DA 2 B DA 4 C DC 5 C DA 6 C
2 1.54 1.54 27.9 -2.23 -0.36 27.5 75 4 2 1 0 2 0 0  DG 3 B DG 4 B DA 4 C DC 5 C DA 6 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer