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PDBsum entry 5kdo
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Pore analysis for: 5kdo calculated with  MOLE 2.0
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PDB id
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5kdo
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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5 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.80 |
1.80 |
29.5 |
-1.62 |
-0.58 |
22.8 |
84 |
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5 |
5 |
2 |
2 |
1 |
0 |
0 |
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GDP 401 A
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2 |
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1.89 |
2.05 |
30.9 |
-1.52 |
-0.57 |
21.6 |
87 |
6 |
4 |
2 |
3 |
1 |
0 |
0 |
GDP 401 A
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3 |
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1.47 |
1.72 |
35.0 |
-0.03 |
-0.20 |
13.0 |
83 |
3 |
2 |
2 |
5 |
1 |
0 |
0 |
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4 |
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1.79 |
2.91 |
35.5 |
-1.68 |
-0.44 |
28.1 |
79 |
4 |
6 |
2 |
3 |
1 |
0 |
0 |
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5 |
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1.81 |
1.81 |
40.8 |
-1.74 |
-0.59 |
19.4 |
85 |
6 |
4 |
3 |
2 |
1 |
0 |
0 |
GDP 401 A
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6 |
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1.78 |
2.98 |
52.3 |
-1.55 |
-0.40 |
23.6 |
81 |
6 |
6 |
4 |
3 |
1 |
0 |
0 |
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7 |
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2.18 |
2.26 |
67.1 |
-1.46 |
-0.51 |
19.1 |
82 |
10 |
5 |
6 |
3 |
2 |
2 |
3 |
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8 |
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2.20 |
2.36 |
74.0 |
-1.57 |
-0.50 |
24.7 |
83 |
9 |
5 |
1 |
5 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program