PDBsum entry 5kdo Go to PDB code:  Tunnel analysis for: 5kdo calculated with MOLE 2.0 PDB id 5kdo Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.44 23.2 2.00 0.60 2.3 85 1 0 2 8 3 0 0   2 1.34 2.27 17.8 -2.00 -0.32 32.4 81 3 3 1 3 0 0 0   3 1.33 1.97 25.5 -2.19 -0.45 31.0 81 4 3 1 3 0 0 0   4 1.34 2.29 30.4 -1.05 -0.41 16.3 84 3 4 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.