PDBsum entry 5k1b Go to PDB code:  Tunnel analysis for: 5k1b calculated with MOLE 2.0 PDB id 5k1b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.19 28.1 0.48 0.29 7.7 76 2 2 4 8 2 0 0   2 1.17 1.18 30.0 0.26 0.24 8.3 74 2 1 3 8 2 1 0   3 1.16 1.17 49.6 -0.44 -0.15 11.7 76 5 2 5 9 3 1 1   4 1.16 1.26 22.8 2.60 0.73 1.1 74 0 0 0 7 2 0 0   5 1.16 1.27 30.9 0.63 -0.18 5.7 82 1 1 3 4 1 0 1   6 1.15 1.87 21.7 2.51 0.86 1.0 77 0 0 0 10 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.