PDBsum entry 5jvy

Pore analysis for: 5jvy calculated with

MOLE 2.0

PDB id

5jvy

Pores calculated on whole structure

Pores calculated excluding ligands

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25 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.68

1.74

31.3

-1.24

-0.35

13.4

75

2

3

5

2

1

1

2

2

2.41

3.51

36.0

-0.75

-0.22

12.4

83

3

1

4

7

2

2

0

3

1.86

2.81

43.3

-1.57

-0.39

24.6

84

5

4

3

2

0

0

0

NAG 1 C

4

1.40

1.57

47.8

-1.51

-0.46

5.6

74

2

0

6

0

4

2

0

5

1.23

1.22

48.6

-1.37

-0.27

13.7

73

4

3

3

3

2

3

0

6

1.14

1.38

64.2

-0.47

-0.26

10.9

79

6

2

5

5

2

2

0

NAG 1 C

7

1.27

1.71

64.1

0.56

0.15

5.8

75

3

1

4

11

7

1

0

NAG 1 C

8

1.30

1.34

66.9

-1.40

-0.23

9.4

67

4

3

6

2

8

3

2

9

1.34

1.80

69.5

0.30

0.03

6.9

77

4

3

5

11

7

1

0

10

1.14

1.36

72.5

-0.83

-0.35

13.5

80

7

4

7

5

2

2

0

NAG 1 D

11

1.22

1.23

75.5

-0.79

-0.24

13.1

79

5

5

3

6

2

3

0

NAG 1 C

12

1.25

1.41

75.9

-0.70

-0.16

13.7

77

6

3

4

5

3

2

0

NAG 1 C

13

1.22

1.44

80.9

-0.91

-0.31

13.7

80

6

7

4

6

2

3

0

NAG 1 D

14

1.22

1.39

81.3

-1.02

-0.31

14.9

79

7

5

5

5

3

2

0

15

1.45

1.67

84.3

-0.60

-0.38

6.8

83

4

1

8

8

3

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.