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PDBsum entry 5juw

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protein ligands links
Transferase PDB id
5juw

 

 

 

 

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Contents
Protein chain
324 a.a.
Ligands
UNX ×22
6NR
Waters ×62
PDB id:
5juw
Name: Transferase
Title: Complex of dot1l with ss148
Structure: Histone-lysine n-methyltransferase, h3 lysine-79 specific. Chain: a. Fragment: unp residues 1-420. Synonym: dot1-like protein,histone h3-k79 methyltransferase,h3-k79- hmtase,lysine n-methyltransferase 4. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: dot1l, kiaa1814, kmt4. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.28Å     R-factor:   0.190     R-free:   0.215
Authors: W.Yu,W.Tempel,Y.Li,S.S.Spurr,E.D.Bayle,P.V.Fish,M.Schapira, C.H.Arrowsmith,A.M.Edwards,C.Bountra,J.Weigelt,P.J.Brown,Structural Genomics Consortium (Sgc)
Key ref: W.Yu et al. Complex of dot1l with ss148. To be published, .
Date:
10-May-16     Release date:   22-Jun-16    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q8TEK3  (DOT1L_HUMAN) -  Histone-lysine N-methyltransferase, H3 lysine-79 specific from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1537 a.a.
324 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.1.1.360  - [histone H3]-lysine(79) N-trimethyltransferase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-lysyl79-[histone H3] + 3 S-adenosyl-L-methionine = N6,N6,N6- trimethyl-L-lysyl79-[histone H3] + 3 S-adenosyl-L-homocysteine + 3 H+
L-lysyl(79)-[histone H3]
+ 3 × S-adenosyl-L-methionine
= N(6),N(6),N(6)- trimethyl-L-lysyl(79)-[histone H3]
+ 3 × S-adenosyl-L-homocysteine
+ 3 × H(+)
Bound ligand (Het Group name = 6NR)
matches with 86.21% similarity
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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