PDBsum entry 5jqp Go to PDB code:  Tunnel analysis for: 5jqp calculated with MOLE 2.0 PDB id 5jqp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.71 2.60 24.3 -1.35 -0.16 22.5 76 4 2 2 4 3 2 0   2 1.34 2.75 30.2 -1.60 -0.36 17.0 87 4 2 4 3 1 2 0   3 1.31 2.49 31.5 -1.50 -0.32 12.5 78 3 2 3 1 2 4 0   4 1.25 1.34 26.3 0.01 0.07 9.8 80 3 0 2 6 2 0 0   5 1.63 1.63 16.2 -1.30 -0.38 26.1 83 3 5 0 3 0 0 0   6 1.63 1.63 16.6 -0.73 -0.28 19.1 82 2 2 0 3 0 0 0   7 1.43 1.45 15.1 -0.54 -0.32 10.3 86 1 3 3 2 1 0 0   8 1.18 1.36 19.0 -0.57 -0.33 7.7 77 2 1 1 2 2 1 0   9 1.29 1.47 19.9 -1.61 -0.76 24.4 82 1 3 1 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.