PDBsum entry 5jpz

Tunnel analysis for: 5jpz calculated with

MOLE 2.0

PDB id

5jpz

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.17

1.17

18.1

0.35

0.11

15.5

79

2

1

1

4

0

0

0

2

1.18

1.18

18.2

-0.38

0.03

18.6

76

2

1

1

4

1

0

0

3

1.18

1.18

18.4

-0.09

0.07

16.0

75

2

1

1

4

1

0

0

4

1.58

1.66

15.1

-0.48

-0.05

14.3

73

1

3

1

2

2

0

1

5

1.45

1.45

16.2

-0.89

-0.42

13.2

81

2

2

3

2

1

0

1

6

2.32

2.50

17.4

-1.09

-0.60

11.6

85

1

1

3

2

1

0

0

7

1.44

1.44

18.6

-1.17

-0.45

16.0

77

3

2

2

2

1

0

1

8

1.44

1.45

22.6

-0.82

-0.40

9.5

77

1

1

3

3

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.