PDBsum entry 5jkd Go to PDB code:  Tunnel analysis for: 5jkd calculated with MOLE 2.0 PDB id 5jkd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 2.24 21.2 0.57 0.47 12.1 74 3 0 1 7 2 0 0   2 1.16 2.19 24.9 1.07 0.51 11.3 69 3 0 1 8 2 0 0   3 1.50 1.50 19.8 -0.94 -0.09 17.0 73 4 0 1 4 1 1 0   4 1.51 1.51 27.7 0.82 0.33 4.5 71 2 1 2 3 4 0 0   5 1.40 1.40 17.3 -0.58 -0.07 6.2 65 2 0 1 1 3 1 1   6 1.74 1.87 21.8 -1.99 -0.67 3.0 86 0 0 4 0 0 1 0   7 1.10 1.36 18.3 -0.24 -0.35 7.8 91 1 1 2 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.