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PDBsum entry 5ji3
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Pore analysis for: 5ji3 calculated with  MOLE 2.0
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PDB id
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5ji3
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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10 pores,
coloured by radius |
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9 pores,
coloured by radius
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9 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.41 |
3.80 |
27.7 |
-2.54 |
-0.53 |
28.1 |
75 |
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3 |
5 |
3 |
1 |
4 |
0 |
0 |
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2 |
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2.33 |
2.80 |
28.3 |
-2.35 |
-0.49 |
35.8 |
81 |
6 |
6 |
1 |
3 |
1 |
0 |
0 |
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3 |
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1.62 |
3.46 |
30.1 |
0.11 |
-0.04 |
14.7 |
86 |
4 |
2 |
1 |
6 |
1 |
0 |
0 |
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4 |
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2.08 |
3.19 |
30.4 |
-1.43 |
-0.29 |
13.9 |
79 |
3 |
2 |
3 |
4 |
2 |
2 |
0 |
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5 |
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1.54 |
2.74 |
31.1 |
0.36 |
0.19 |
13.6 |
84 |
3 |
2 |
1 |
8 |
0 |
0 |
0 |
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6 |
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1.91 |
2.11 |
33.7 |
-2.01 |
-0.45 |
25.3 |
80 |
4 |
3 |
1 |
4 |
0 |
0 |
0 |
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7 |
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1.12 |
1.69 |
36.7 |
0.30 |
0.11 |
13.0 |
79 |
4 |
3 |
1 |
7 |
0 |
0 |
0 |
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8 |
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1.89 |
2.18 |
75.2 |
-2.28 |
-0.59 |
24.4 |
80 |
12 |
9 |
3 |
4 |
2 |
2 |
0 |
DAT 501 E
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9 |
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2.08 |
2.56 |
123.9 |
-2.06 |
-0.53 |
27.6 |
84 |
13 |
7 |
5 |
5 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program