PDBsum entry 5jee Go to PDB code:  Tunnel analysis for: 5jee calculated with MOLE 2.0 PDB id 5jee Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.41 17.3 2.21 0.73 3.5 85 1 0 2 10 0 0 0   2 1.23 1.43 19.0 2.02 0.66 3.6 85 1 0 2 10 0 0 0   3 1.23 1.40 15.3 1.94 0.46 6.5 76 1 1 0 8 0 0 0   4 1.08 3.15 18.0 2.06 0.50 6.3 74 1 1 0 9 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.