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PDBsum entry 5jc3
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Pore analysis for: 5jc3 calculated with  MOLE 2.0
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PDB id
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5jc3
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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20 pores,
coloured by radius |
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16 pores,
coloured by radius
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16 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.21 |
2.21 |
28.2 |
-1.15 |
-0.64 |
18.0 |
84 |
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1 |
3 |
1 |
2 |
0 |
0 |
0 |
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G 1 D G 2 D G 2 X U 3 X A 4 X G 1 Y G 2 Y
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2 |
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1.44 |
1.75 |
35.7 |
-1.46 |
-0.32 |
24.1 |
84 |
5 |
5 |
4 |
4 |
0 |
0 |
0 |
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3 |
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1.40 |
1.78 |
35.9 |
-1.62 |
-0.36 |
25.2 |
84 |
5 |
5 |
4 |
4 |
0 |
0 |
0 |
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4 |
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2.16 |
2.19 |
46.4 |
-2.41 |
-0.70 |
27.7 |
83 |
6 |
5 |
3 |
1 |
0 |
0 |
0 |
G 2 C U 3 C A 4 C C 5 C G 2 D U 3 D A 4 D C 5 D
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5 |
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2.01 |
2.49 |
49.5 |
-2.42 |
-0.72 |
25.4 |
90 |
4 |
10 |
6 |
2 |
0 |
0 |
0 |
C 5 Y
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6 |
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2.01 |
3.43 |
59.7 |
-1.90 |
-0.22 |
24.3 |
78 |
9 |
1 |
3 |
4 |
1 |
0 |
0 |
G 1 D G 2 D G 1 Y
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7 |
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2.04 |
2.08 |
61.4 |
-2.57 |
-0.71 |
29.8 |
80 |
8 |
5 |
2 |
0 |
0 |
0 |
0 |
G 1 D G 2 D U 3 X A 4 X C 5 X G 1 Y G 2 Y U 3 Y A
4 Y C 5 Y
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8 |
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1.81 |
2.27 |
61.7 |
-1.25 |
-0.20 |
18.2 |
80 |
8 |
1 |
5 |
5 |
1 |
0 |
0 |
G 2 X
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9 |
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2.01 |
2.48 |
72.0 |
-2.34 |
-0.67 |
22.3 |
86 |
8 |
9 |
8 |
4 |
0 |
0 |
0 |
C 5 D
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10 |
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1.40 |
1.74 |
81.9 |
-1.93 |
-0.49 |
27.1 |
82 |
10 |
6 |
5 |
4 |
0 |
0 |
0 |
G 1 D G 2 D U 3 X A 4 X C 5 X G 1 Y G 2 Y U 3 Y A
4 Y C 5 Y
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11 |
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2.29 |
2.28 |
85.3 |
-1.96 |
-0.72 |
22.4 |
79 |
11 |
5 |
2 |
0 |
0 |
0 |
0 |
G 2 C U 3 C A 4 C C 5 C G 6 C U 7 C A 8 C C 9 C C
10 C G 1 D G 2 D C 5 X G 6 X U 7 X A 8 X C 9 X C
10 X G 1 Y G 2 Y U 3 Y A 4 Y C 5 Y
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12 |
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1.86 |
2.77 |
102.6 |
-1.84 |
-0.67 |
22.4 |
84 |
11 |
11 |
6 |
3 |
0 |
1 |
0 |
U 7 C A 8 C C 9 C C 10 C G 1 D G 2 X U 3 X A 4 X
C 5 X G 6 X U 7 X A 8 X C 9 X C 10 X G 1 Y G 2 Y
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13 |
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1.77 |
2.56 |
108.4 |
-2.00 |
-0.68 |
23.2 |
82 |
13 |
11 |
6 |
2 |
0 |
1 |
0 |
G 2 C U 3 C A 4 C C 5 C G 6 C U 7 C A 8 C C 9 C C
10 C G 1 D G 2 D U 7 X A 8 X C 9 X C 10 X G 1 Y
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14 |
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1.23 |
3.61 |
121.0 |
-2.16 |
-0.58 |
25.6 |
82 |
19 |
6 |
5 |
3 |
1 |
0 |
0 |
C 5 C G 6 C U 7 C A 8 C C 9 C C 10 C G 1 D G 2 D
U 3 D A 4 D C 5 D G 1 X G 2 X C 5 X G 6 X U 7 X A
8 X C 9 X C 10 X G 1 Y G 2 Y U 3 Y A 4 Y C 5 Y C
10 Y
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15 |
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1.23 |
3.61 |
120.5 |
-2.19 |
-0.58 |
25.9 |
81 |
19 |
6 |
5 |
3 |
1 |
0 |
0 |
G 1 C G 2 C C 5 C G 6 C U 7 C A 8 C C 9 C C 10 C
G 1 D G 2 D U 3 D A 4 D C 5 D C 5 X G 6 X U 7 X A
8 X C 9 X C 10 X G 1 Y G 2 Y U 3 Y A 4 Y C 5 Y
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16 |
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2.26 |
3.51 |
148.0 |
-2.01 |
-0.42 |
27.1 |
85 |
13 |
19 |
11 |
7 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program