PDBsum entry 5j2c Go to PDB code:  Pore analysis for: 5j2c calculated with MOLE 2.0 PDB id 5j2c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.27 26.3 -1.03 -0.70 13.0 91 1 2 2 2 0 0 0   2 3.35 3.35 54.2 -1.25 -0.52 17.0 92 3 1 2 2 0 0 0  DG 1 P DT 6 P DG 7 P DC 5 T DA 6 T DC 7 T DC 8 T DT 12 T DC 13 T DA 14 T 3 1.56 1.67 54.8 -1.22 -0.27 17.4 90 5 3 3 4 1 1 0  DUP 401 A DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DC 5 T DA 6 T DC 7 T DC 8 T 4 1.56 1.72 97.3 -1.45 -0.52 15.7 91 7 4 6 5 1 1 0  DUP 401 A DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DT 12 T DC 13 T DA 14 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.