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PDBsum entry 5iy7
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5iy7 calculated with MOLE 2.0 PDB id
5iy7
Pores calculated on whole structure Pores calculated excluding ligands
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50 pores, coloured by radius 53 pores, coloured by radius 53 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.32 46.6 -0.66 -0.13 17.0 82 5 2 3 5 1 0 0  
2 1.27 1.73 73.0 -1.49 -0.39 25.2 85 9 7 6 5 2 0 0  
3 1.18 1.72 83.1 -1.12 -0.22 17.1 83 5 3 6 4 2 2 0  
4 2.56 4.13 89.1 -1.63 -0.50 19.9 88 6 4 7 4 0 1 0  DA 33 X DA 34 X DT 35 X DT 36 X DC 66 Y DC 67 Y
5 1.26 1.27 107.9 -0.92 -0.14 18.4 82 11 5 4 8 1 0 0  DG 22 X DT 23 X DA 33 X DC 66 Y DC 67 Y DC 68 Y
DC 70 Y DA 71 Y DC 72 Y
6 2.12 2.12 130.1 -1.86 -0.26 23.6 78 9 9 7 3 5 0 0  DT 23 X DG 24 X DG 25 X DG 26 X DG 27 X DA 33 X
DC 66 Y DC 67 Y
7 1.85 1.85 132.0 -1.45 -0.35 22.8 79 15 11 6 10 2 3 0  
8 1.33 1.36 139.3 -0.73 -0.13 16.5 82 11 9 8 13 3 1 1  DG 19 X
9 1.22 1.32 143.0 -1.72 -0.52 21.2 88 16 6 11 7 1 1 0  DA 33 X DT 35 X DG 56 Y DA 57 Y DC 58 Y DG 59 Y D
A 60 Y DA 61 Y DG 63 Y DC 64 Y DG 65 Y DC 66 Y DC
67 Y
10 2.10 2.26 155.6 -1.02 -0.25 16.4 83 17 4 10 11 6 1 0  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DC 46 Y DG 47 Y DC 48 Y DG 49 Y
DG 63 Y DC 64 Y DG 65 Y DC 66 Y DC 67 Y
11 1.12 1.27 154.3 -1.80 -0.56 22.0 85 12 11 8 8 0 2 0  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DC 42 Y DG 43 Y DA 44 Y DT 45 Y
DC 46 Y DG 47 Y DC 48 Y DG 49 Y DG 63 Y DC 64 Y
DG 65 Y DC 66 Y DC 67 Y
12 1.21 1.41 155.3 -1.29 -0.16 19.7 79 14 5 7 12 4 3 0  DC 59 X DG 39 Y
13 1.60 1.85 163.6 -1.87 -0.47 24.5 84 20 10 8 8 0 3 0  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DC 46 Y DG 47 Y DC 48 Y DG 49 Y
DG 63 Y DC 64 Y DG 65 Y DC 66 Y DC 67 Y
14 1.26 1.48 166.8 -1.78 -0.38 23.7 83 15 9 7 11 2 2 0  
15 1.32 1.34 168.9 -1.90 -0.20 25.5 79 20 11 10 9 5 0 0  DG 27 X DG 28 X DC 69 Y DC 70 Y
16 1.23 1.39 170.5 -0.64 -0.17 14.3 84 12 2 7 14 2 1 0  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DG 48 X DA 49 X DT 50 X DC 59 X
DG 39 Y DT 41 Y DC 42 Y DG 43 Y DA 44 Y DT 45 Y
DC 46 Y DG 47 Y DC 48 Y DG 49 Y DG 63 Y DC 64 Y
DG 65 Y DC 66 Y DC 67 Y
17 1.59 1.71 171.8 -1.40 -0.35 25.2 83 15 11 8 10 1 0 1  
18 1.27 1.31 178.0 -1.75 -0.44 22.2 81 17 14 11 10 3 6 0  
19 1.35 1.75 184.0 -1.41 -0.41 22.4 85 14 12 8 9 3 0 0  DT 23 X DG 24 X DG 25 X DG 26 X DG 27 X DA 33 X
DC 66 Y DC 67 Y
20 2.45 2.77 187.7 -2.06 -0.41 24.0 79 19 10 9 9 7 3 0  
21 1.60 1.84 188.9 -2.30 -0.45 26.6 81 28 13 10 9 4 4 0  DA 49 X DT 41 Y DC 42 Y DG 43 Y
22 1.81 3.00 204.6 -1.51 -0.50 19.4 85 12 12 9 12 3 4 1  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DC 42 Y DG 43 Y DA 44 Y DT 45 Y
DC 46 Y DG 47 Y DC 48 Y DG 49 Y DG 63 Y DC 64 Y
DG 65 Y DC 66 Y DC 67 Y
23 1.15 1.51 207.5 -1.45 -0.45 18.9 87 17 9 16 13 2 2 0  DT 36 X DT 37 X DT 38 X DT 39 X DT 40 X DT 42 X D
A 54 Y DG 55 Y DG 56 Y DA 57 Y
24 1.52 1.67 216.6 -1.47 -0.45 22.1 83 21 15 12 10 0 1 1  DG 21 X DG 22 X DT 23 X DG 24 X DT 35 X DT 36 X
DC 62 Y DG 63 Y DG 65 Y DC 66 Y DC 67 Y
25 1.31 1.40 227.1 -1.50 -0.40 21.8 86 19 9 8 14 0 3 0  DA 33 X DT 35 X DT 40 X DT 41 X DT 42 X DT 43 X
DC 45 X DG 46 X DG 48 X DA 49 X DT 50 X DT 41 Y
DC 42 Y DG 43 Y DA 44 Y DT 45 Y DC 46 Y DG 47 Y
DC 48 Y DG 49 Y DG 63 Y DC 64 Y DG 65 Y DC 66 Y
DC 67 Y
26 2.46 2.46 224.1 -1.95 -0.38 22.6 82 18 15 15 7 5 1 0  DG 26 X DG 27 X DG 28 X DT 35 X DT 36 X DC 62 Y
DG 63 Y DG 65 Y DC 66 Y
27 1.26 1.77 232.5 -1.60 -0.29 24.2 84 24 13 13 15 4 0 0  DG 27 X DG 28 X DC 69 Y DC 70 Y
28 1.34 1.48 236.3 -1.88 -0.47 24.1 84 27 15 17 12 1 6 0  DT 41 X DT 42 X DT 43 X DC 45 X DG 46 X DC 46 Y
DG 47 Y DC 48 Y DG 49 Y DA 50 Y DA 54 Y DG 55 Y
DG 56 Y DA 57 Y
29 1.40 1.52 256.4 -1.26 -0.25 20.4 83 20 16 13 16 4 8 1  
30 1.26 1.76 263.0 -1.60 -0.44 21.7 86 21 16 16 13 3 1 0  DG 26 X DG 27 X DG 28 X DT 35 X DT 36 X DC 62 Y
DG 63 Y DG 65 Y DC 66 Y
31 1.65 1.65 26.8 -1.14 -0.38 13.4 77 2 0 1 2 1 2 0  
32 1.42 1.61 27.3 0.28 0.21 15.4 74 3 2 1 4 2 1 1  
33 1.63 1.73 36.4 -1.35 -0.40 8.9 81 3 0 3 1 1 0 1  
34 1.28 1.28 40.7 0.10 -0.34 4.1 86 1 0 2 2 1 1 0  DG 65 X DA 66 X DG 67 X DG 26 Y DC 27 Y DT 28 Y
DC 29 Y DG 30 Y DG 31 Y
35 1.63 1.73 46.3 -2.17 -0.44 25.6 85 5 2 2 3 1 0 0  
36 1.25 1.91 118.2 -0.50 -0.19 13.3 89 6 3 7 13 0 1 0  DG 62 X DG 65 X DA 66 X DC 27 Y DT 28 Y DC 29 Y
DG 30 Y
37 1.24 2.94 128.7 -0.01 -0.02 11.6 82 9 4 5 23 4 1 1  
38 1.24 2.93 127.8 -0.60 -0.17 16.8 82 9 7 2 16 4 1 0  
39 1.27 3.45 132.7 -0.25 -0.01 15.8 82 10 8 7 20 6 0 0  
40 1.61 3.01 128.8 -0.79 -0.19 16.8 83 5 9 6 12 4 1 0  
41 1.91 1.95 135.7 -0.68 -0.19 13.8 87 6 7 8 14 1 1 0  DG 62 X DG 65 X DA 66 X DC 27 Y DT 28 Y DC 29 Y
DG 30 Y
42 1.35 1.35 143.2 -1.57 -0.45 22.9 85 6 8 3 8 3 1 0  
43 1.33 1.34 158.3 -1.41 -0.38 22.8 83 5 9 4 6 3 1 1  
44 1.73 2.93 180.8 -0.72 -0.04 16.9 82 11 6 7 19 5 0 0  
45 1.41 1.40 193.4 -0.84 -0.21 16.4 82 9 12 6 18 6 2 0  
46 1.99 3.72 211.9 -1.74 -0.33 22.6 85 14 9 8 13 2 1 0  
47 1.29 1.48 26.6 2.79 1.01 0.7 82 0 0 0 11 1 1 0  
48 1.96 2.30 27.0 -0.30 -0.12 15.5 65 3 0 1 5 1 1 0  
49 1.30 1.30 30.3 -0.85 -0.23 12.3 74 3 2 2 4 2 1 0  
50 1.43 1.55 35.9 -0.20 -0.30 11.1 77 4 3 2 8 1 0 0  
51 1.39 1.61 40.2 1.96 0.73 3.8 70 1 0 0 14 3 2 1  
52 1.28 1.80 46.8 1.24 0.45 7.7 70 3 1 1 10 2 1 0  
53 1.18 1.27 47.8 0.12 0.00 9.0 66 4 1 1 6 4 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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