spacer
spacer

PDBsum entry 5irz

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5irz calculated with MOLE 2.0 PDB id
5irz
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
11 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.07 2.51 151.3 -1.74 -0.38 22.4 88 10 6 14 13 2 0 0  6ES 802 B 6ES 802 C
2 1.68 2.49 151.2 -1.86 -0.39 21.1 88 10 6 13 13 2 0 0  6ES 802 B 6ES 802 E
3 1.67 2.33 151.3 -1.88 -0.40 21.3 88 10 6 14 13 2 0 0  6ES 802 C 6ES 802 E
4 1.68 2.51 151.1 -1.77 -0.39 21.8 88 10 6 14 13 2 0 0  6ES 802 D 6ES 802 E
5 1.68 2.51 151.4 -1.75 -0.38 21.9 88 10 6 14 13 2 0 0  6ES 802 C 6ES 802 D
6 1.68 2.51 151.4 -1.75 -0.38 21.9 88 10 6 14 13 2 0 0  6ES 802 B 6ES 802 D
7 1.09 1.24 151.5 -0.25 0.26 14.6 79 4 5 6 16 10 1 0  6O8 801 B 6ES 802 B 6OE 804 B
8 1.09 1.24 151.5 -0.24 0.26 14.7 79 4 5 6 16 10 1 0  6O8 801 C 6ES 802 C 6OE 804 C
9 1.16 1.22 156.3 -0.29 0.26 14.7 76 4 5 6 16 12 1 0  6O8 801 E 6ES 802 E 6OE 805 E
10 1.66 1.65 195.3 -0.05 0.34 11.4 78 4 6 8 17 13 1 0  6OE 806 C 6O8 801 D 6ES 802 D 6OE 805 D 6OE 806 D
6OE 806 E
11 1.20 1.26 278.6 -0.75 0.07 19.4 81 14 7 10 21 10 1 1  6O8 801 B 6OE 804 B 6ES 802 D
12 1.59 1.59 322.3 -0.60 0.13 16.9 80 14 8 12 22 13 1 1  6OE 806 C 6O8 801 D 6OE 805 D 6OE 806 D 6ES 802 E
6OE 806 E
13 1.25 1.24 351.1 -1.00 -0.10 18.5 79 19 9 13 19 13 3 2  6ES 802 B 6O8 801 C 6OE 804 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer