PDBsum entry 5irc Go to PDB code:  Tunnel analysis for: 5irc calculated with MOLE 2.0 PDB id 5irc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 1.09 37.8 -2.12 -0.53 25.8 83 5 4 5 3 3 3 0   2 1.12 1.11 41.0 -1.51 -0.57 21.2 82 4 4 6 4 4 4 0   3 1.10 1.10 43.6 -2.24 -0.70 28.3 87 6 5 7 4 2 4 0   4 1.16 1.16 44.9 -1.24 -0.27 21.2 79 4 4 6 3 4 5 0   5 1.14 1.14 45.2 -2.32 -0.62 29.5 82 5 8 4 3 2 4 0   6 1.15 1.14 68.2 -2.17 -0.56 25.1 80 7 7 7 3 4 6 0   7 1.22 1.22 17.8 -2.01 -0.81 16.9 88 0 3 4 1 0 1 0   8 1.60 1.60 23.0 -0.89 -0.39 23.6 86 3 4 3 2 0 0 0   9 1.60 1.60 26.1 -0.72 -0.44 17.3 91 2 6 4 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.