PDBsum entry 5imx

Tunnel analysis for: 5imx calculated with

MOLE 2.0

PDB id

5imx

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.49

1.56

17.2

-0.01

-0.03

13.8

80

3

4

0

6

4

1

0

2

1.49

1.67

18.9

0.11

0.00

12.8

80

3

4

0

6

4

1

0

3

1.10

1.84

20.5

0.35

-0.06

10.8

85

5

1

1

8

0

2

0

CZ4 1501 A

4

1.49

1.56

20.6

-0.77

-0.36

15.4

81

5

3

1

5

4

2

0

CZ4 1501 A

5

1.55

1.70

22.2

-0.62

-0.29

14.3

81

5

3

1

5

4

2

0

CZ4 1501 A

6

1.09

1.52

25.0

0.90

0.14

11.5

81

5

1

1

8

0

2

0

CZ4 1501 A

7

1.25

1.25

29.6

1.25

0.29

8.3

81

4

2

1

8

3

2

2

8

1.23

1.40

31.2

1.29

0.33

8.2

81

4

2

1

8

2

2

2

9

1.19

1.38

18.6

1.42

0.54

11.0

72

4

1

0

6

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.