PDBsum entry 5ij8 Go to PDB code:  Tunnel analysis for: 5ij8 calculated with MOLE 2.0 PDB id 5ij8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.59 34.1 -1.64 -0.48 12.8 72 3 2 3 1 3 1 1   2 1.30 1.39 35.0 -2.18 -0.45 23.0 75 4 6 4 3 2 0 1   3 1.59 1.95 17.4 -0.55 -0.04 19.6 82 2 1 1 4 1 0 1   4 1.55 1.94 27.1 -0.91 -0.01 18.3 78 2 0 2 3 1 0 1   5 1.35 2.11 18.8 -0.29 -0.42 9.0 95 1 2 3 3 0 0 0   6 1.36 2.29 19.0 0.26 -0.19 5.9 90 1 0 3 4 0 1 0   7 1.19 1.50 17.5 1.31 0.67 12.8 73 3 1 0 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.