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PDBsum entry 5ii2

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protein ligands metals Protein-protein interface(s) links
Transcription PDB id
5ii2

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
115 a.a.
Ligands
CIT
LU2 ×2
Metals
__K ×2
Waters ×182
PDB id:
5ii2
Name: Transcription
Title: Crystal structure of the fifth bromodomain of human polybromo (pb1) in complex with 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4h-chromen-4-one
Structure: Protein polybromo-1. Chain: a, b. Synonym: hpb1,brg1-associated factor 180,baf180,polybromo-1d. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pbrm1, baf180, pb1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Expression_system_variant: r3.
Resolution:
2.10Å     R-factor:   0.176     R-free:   0.227
Authors: P.Filippakopoulos,S.Picaud,I.Felletar,F.Von Delft,A.M.Edwards, C.H.Arrowsmith,C.Bountra,S.Knapp
Key ref: V.Myrianthopoulos et al. (2016). Discovery and Optimization of a Selective Ligand for the Switch/Sucrose Nonfermenting-Related Bromodomains of Polybromo Protein-1 by the Use of Virtual Screening and Hydration Analysis. J Med Chem, 59, 8787-8803. PubMed id: 27617704 DOI: 10.1021/acs.jmedchem.6b00355
Date:
01-Mar-16     Release date:   29-Jun-16    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q86U86  (PB1_HUMAN) -  Protein polybromo-1 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1689 a.a.
115 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1021/acs.jmedchem.6b00355 J Med Chem 59:8787-8803 (2016)
PubMed id: 27617704  
 
 
Discovery and Optimization of a Selective Ligand for the Switch/Sucrose Nonfermenting-Related Bromodomains of Polybromo Protein-1 by the Use of Virtual Screening and Hydration Analysis.
V.Myrianthopoulos, N.Gaboriaud-Kolar, C.Tallant, M.L.Hall, S.Grigoriou, P.M.Brownlee, O.Fedorov, C.Rogers, D.Heidenreich, M.Wanior, N.Drosos, N.Mexia, P.Savitsky, T.Bagratuni, E.Kastritis, E.Terpos, P.Filippakopoulos, S.Müller, A.L.Skaltsounis, J.A.Downs, S.Knapp, E.Mikros.
 
  ABSTRACT  
 
No abstract given.

 

 

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