PDBsum entry 5ido Go to PDB code:  Tunnel analysis for: 5ido calculated with MOLE 2.0 PDB id 5ido Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.14 15.3 -0.46 -0.07 7.7 79 0 1 0 1 2 1 0   2 1.54 1.80 19.2 -1.01 -0.41 14.5 90 2 2 4 3 1 0 0  UTP 701 A MG 703 A 3 1.55 1.75 23.0 0.58 0.25 7.9 87 1 1 2 7 3 0 0  UTP 701 A MG 703 A 4 1.56 1.79 23.7 -1.25 -0.44 18.8 89 3 4 4 3 1 0 0  UTP 701 A MG 703 A 5 1.52 1.75 28.2 -0.22 0.08 11.4 79 2 1 2 3 3 0 0  UTP 701 A MG 703 A 6 1.65 2.25 22.0 -2.43 -0.36 32.5 77 7 2 0 1 1 0 0   7 1.23 1.23 16.3 1.41 0.77 9.2 61 3 0 0 5 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.