 |
PDBsum entry 5hfr
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5hfr calculated with MOLE 2.0
|
PDB id
|
|
|
|
5hfr
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
7 pores,
coloured by radius |
 |
12 pores,
coloured by radius
|
12 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.56 |
1.61 |
27.4 |
0.60 |
0.38 |
7.5 |
70 |
 |
3 |
2 |
1 |
4 |
3 |
2 |
1 |
 |
|
 |
 |
2 |
 |
1.24 |
3.66 |
29.8 |
-2.41 |
-0.28 |
25.8 |
75 |
5 |
3 |
1 |
2 |
2 |
3 |
0 |
EDO 501 D
|
 |
3 |
 |
1.24 |
3.63 |
41.5 |
-2.24 |
-0.15 |
26.2 |
69 |
10 |
2 |
2 |
3 |
5 |
4 |
0 |
EDO 501 D
|
 |
4 |
 |
1.68 |
2.69 |
46.0 |
-1.98 |
-0.30 |
23.5 |
77 |
8 |
2 |
1 |
3 |
1 |
4 |
0 |
|
 |
5 |
 |
1.31 |
3.25 |
50.9 |
-1.40 |
-0.20 |
17.9 |
73 |
11 |
1 |
2 |
4 |
3 |
3 |
0 |
|
 |
6 |
 |
1.15 |
3.48 |
52.7 |
-1.81 |
-0.18 |
23.0 |
77 |
10 |
1 |
3 |
4 |
2 |
2 |
0 |
EDO 501 D
|
 |
7 |
 |
1.31 |
3.50 |
60.8 |
-1.51 |
-0.17 |
20.8 |
75 |
13 |
1 |
3 |
7 |
3 |
2 |
0 |
|
 |
8 |
 |
2.67 |
3.33 |
62.2 |
-2.12 |
-0.42 |
28.1 |
81 |
11 |
2 |
3 |
6 |
0 |
0 |
0 |
|
 |
9 |
 |
1.54 |
2.47 |
63.0 |
-1.63 |
-0.25 |
19.0 |
77 |
11 |
1 |
2 |
7 |
1 |
4 |
0 |
|
 |
10 |
 |
1.36 |
3.41 |
64.8 |
-1.00 |
-0.07 |
12.2 |
73 |
9 |
2 |
2 |
4 |
4 |
5 |
1 |
|
 |
11 |
 |
1.23 |
3.71 |
66.4 |
-1.62 |
-0.30 |
17.8 |
77 |
12 |
1 |
3 |
7 |
2 |
3 |
0 |
EDO 501 D
|
 |
12 |
 |
1.19 |
3.42 |
68.7 |
-1.55 |
0.01 |
18.9 |
71 |
9 |
3 |
3 |
4 |
6 |
6 |
1 |
EDO 501 D
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |