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PDBsum entry 5hfr

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Pore analysis for: 5hfr calculated with MOLE 2.0 PDB id
5hfr
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 1.61 27.4 0.60 0.38 7.5 70 3 2 1 4 3 2 1  
2 1.24 3.66 29.8 -2.41 -0.28 25.8 75 5 3 1 2 2 3 0  EDO 501 D
3 1.24 3.63 41.5 -2.24 -0.15 26.2 69 10 2 2 3 5 4 0  EDO 501 D
4 1.68 2.69 46.0 -1.98 -0.30 23.5 77 8 2 1 3 1 4 0  
5 1.31 3.25 50.9 -1.40 -0.20 17.9 73 11 1 2 4 3 3 0  
6 1.15 3.48 52.7 -1.81 -0.18 23.0 77 10 1 3 4 2 2 0  EDO 501 D
7 1.31 3.50 60.8 -1.51 -0.17 20.8 75 13 1 3 7 3 2 0  
8 2.67 3.33 62.2 -2.12 -0.42 28.1 81 11 2 3 6 0 0 0  
9 1.54 2.47 63.0 -1.63 -0.25 19.0 77 11 1 2 7 1 4 0  
10 1.36 3.41 64.8 -1.00 -0.07 12.2 73 9 2 2 4 4 5 1  
11 1.23 3.71 66.4 -1.62 -0.30 17.8 77 12 1 3 7 2 3 0  EDO 501 D
12 1.19 3.42 68.7 -1.55 0.01 18.9 71 9 3 3 4 6 6 1  EDO 501 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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