PDBsum entry 5hez

Pore analysis for: 5hez calculated with

MOLE 2.0

PDB id

5hez

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.64

1.84

37.3

0.08

0.15

8.6

73

3

0

4

6

7

2

0

1M3 1203 A

2

1.95

2.15

45.1

-1.71

-0.36

25.0

75

8

5

1

2

1

2

0

PTR 1008 C 1M3 1201 C

3

2.32

2.36

45.8

-2.88

-0.55

36.7

80

11

5

2

2

0

1

0

PTR 1007 B PTR 1008 B PTR 1008 C

4

1.67

1.67

55.8

-2.53

-0.55

27.4

83

7

4

7

1

1

0

0

1M3 1203 D

5

2.34

4.53

56.0

-0.63

-0.02

17.4

73

7

3

2

6

6

2

0

1M3 1202 B CL 1201 D

6

1.35

1.36

63.7

-1.30

-0.26

14.9

77

6

4

4

4

4

3

0

PTR 1007 D PTR 1008 D 1M3 1202 D

7

1.95

2.14

67.7

-1.87

-0.49

24.0

81

10

7

7

3

1

2

0

1M3 1204 A PTR 1008 C 1M3 1201 C

8

2.04

2.22

75.1

-2.36

-0.53

31.9

77

13

7

5

2

1

2

0

PTR 1008 B 1M3 1203 B PTR 1008 C

9

1.34

1.31

90.7

-1.26

-0.12

16.6

75

8

3

8

8

9

5

0

1M3 1202 D

10

1.40

1.60

95.1

-0.93

-0.13

13.6

79

7

3

13

9

7

5

0

1M3 1202 B 1M3 1203 D

11

1.48

1.59

164.5

-1.18

-0.23

16.3

77

18

8

12

14

9

9

0

PTR 1007 B PTR 1008 B 1M3 1203 B 1M3 1202 D 1M3
1203 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.