PDBsum entry 5he0

Tunnel analysis for: 5he0 calculated with

MOLE 2.0

PDB id

5he0

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.23

1.45

16.4

-0.82

-0.12

15.7

78

4

1

0

2

2

1

0

2

1.28

1.64

30.0

-1.97

-0.41

25.2

81

3

2

2

2

2

0

1

3

1.46

1.62

36.0

-1.08

-0.46

14.8

83

4

1

5

3

2

2

2

4

1.47

1.64

37.2

-0.99

-0.42

14.5

88

3

1

5

4

1

1

2

5

1.30

2.60

19.4

0.02

-0.28

14.8

75

1

3

1

5

0

0

0

453 701 A

6

1.82

2.00

16.5

-2.23

-0.45

29.2

72

2

2

1

1

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.