PDBsum entry 5h8f

Tunnel analysis for: 5h8f calculated with

MOLE 2.0

PDB id

5h8f

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.56

2.11

29.8

-1.78

-0.59

20.9

78

1

3

1

2

1

1

0

2

1.74

2.45

30.5

-0.97

-0.15

16.6

74

4

4

1

3

1

2

0

GOL 305 B

3

1.63

2.49

31.3

-0.91

-0.14

20.1

74

4

3

0

4

2

2

0

GOL 305 B

4

1.64

2.07

32.1

-1.57

-0.60

22.7

81

1

5

1

2

1

1

0

5

1.46

1.86

23.9

-1.64

-0.47

18.4

88

3

3

4

2

1

0

0

6

1.45

1.80

28.6

-1.89

-0.54

16.7

90

4

1

6

2

1

0

0

7

1.42

1.62

37.9

-0.76

-0.23

13.7

89

4

2

3

5

2

0

0

GLU 302 A

8

1.47

1.51

16.9

-0.06

-0.16

10.9

91

2

1

3

2

1

0

0

9

1.49

1.53

25.2

-0.33

-0.22

10.2

87

3

1

4

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.