PDBsum entry 5h3c Go to PDB code:  Tunnel analysis for: 5h3c calculated with MOLE 2.0 PDB id 5h3c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.63 2.58 16.0 -1.44 -0.31 24.0 79 2 3 1 2 2 0 0   2 1.51 4.33 17.2 -1.85 -0.41 29.7 80 4 3 1 1 1 0 0   3 1.67 1.67 25.7 -1.66 -0.35 22.1 77 3 3 1 1 3 1 0  MSE 107 A 4 1.64 1.65 30.0 -1.34 -0.28 21.2 74 4 3 0 1 3 1 0   5 1.48 3.01 15.7 -0.86 -0.05 24.2 74 2 2 1 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.