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PDBsum entry 5gs0

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5gs0 calculated with MOLE 2.0 PDB id
5gs0
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.80 1.83 28.3 -1.33 -0.60 18.3 84 2 4 2 0 1 1 0  
2 3.61 3.61 29.4 -2.03 -0.51 18.6 88 2 1 1 0 0 2 0  
3 2.38 2.38 29.4 -1.43 -0.36 8.8 83 2 1 1 1 0 3 0  
4 1.79 1.84 39.1 -1.28 -0.67 16.7 87 3 4 3 0 1 1 0  
5 1.41 1.57 68.2 -1.60 -0.33 16.4 83 6 4 6 3 3 4 0  
6 1.41 1.58 72.2 -1.77 -0.41 17.2 84 5 6 6 3 2 2 0  
7 2.54 2.86 73.1 -1.14 -0.70 9.6 98 5 1 9 2 0 0 0  
8 1.33 3.10 82.2 -2.50 -0.54 21.6 84 6 4 12 1 2 1 0  
9 1.14 3.19 86.7 -2.15 -0.54 22.5 84 9 4 9 2 0 4 0  
10 1.31 3.01 99.5 -2.27 -0.57 23.7 81 9 6 9 2 1 3 0  
11 1.41 1.58 102.6 -1.78 -0.41 16.9 86 8 4 11 2 2 4 0  
12 1.28 3.02 105.3 -2.52 -0.76 16.5 89 7 3 15 2 0 1 0  
13 1.24 3.14 121.5 -2.34 -0.60 23.1 87 11 4 15 1 0 4 0  
14 1.37 1.55 34.0 -2.15 -0.43 21.1 88 6 1 6 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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