PDBsum entry 5gnd Go to PDB code:  Tunnel analysis for: 5gnd calculated with MOLE 2.0 PDB id 5gnd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.82 16.5 -0.18 -0.09 6.2 67 0 1 1 3 3 0 0  UNK 98 U 2 1.37 1.81 20.6 -0.58 0.05 18.3 79 1 1 1 6 2 0 0   3 1.29 1.51 18.2 0.02 -0.41 6.2 94 0 1 1 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.