 |
PDBsum entry 5gai
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5gai calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5gai
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
26 tunnels,
coloured by tunnel radius |
|
26 tunnels,
coloured by
tunnel radius
|
26 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.57 |
29.3 |
-0.70 |
-0.16 |
24.7 |
82 |
|
4 |
5 |
1 |
3 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.22 |
1.22 |
16.8 |
-0.07 |
-0.09 |
13.8 |
70 |
0 |
1 |
1 |
2 |
4 |
0 |
1 |
|
|
3 |
 |
1.16 |
1.25 |
41.3 |
-1.17 |
-0.49 |
20.3 |
78 |
3 |
6 |
1 |
2 |
3 |
0 |
0 |
|
|
4 |
 |
1.17 |
1.25 |
47.1 |
-1.42 |
-0.55 |
24.2 |
81 |
4 |
8 |
1 |
3 |
2 |
0 |
0 |
|
|
5 |
 |
1.24 |
1.24 |
48.0 |
-0.65 |
-0.36 |
11.8 |
76 |
4 |
5 |
3 |
3 |
5 |
0 |
0 |
|
|
6 |
 |
1.24 |
1.22 |
53.8 |
-1.03 |
-0.43 |
17.3 |
78 |
5 |
7 |
3 |
4 |
4 |
0 |
0 |
|
|
7 |
 |
1.27 |
1.54 |
30.2 |
-1.78 |
-0.58 |
26.2 |
84 |
5 |
6 |
1 |
3 |
1 |
0 |
0 |
|
|
8 |
 |
1.44 |
1.45 |
29.2 |
-2.50 |
-0.22 |
38.6 |
80 |
9 |
5 |
0 |
3 |
2 |
0 |
0 |
|
|
9 |
 |
1.25 |
1.25 |
28.3 |
-0.74 |
-0.05 |
19.3 |
79 |
5 |
3 |
1 |
4 |
2 |
1 |
0 |
|
|
10 |
 |
1.35 |
1.51 |
44.0 |
-1.65 |
-0.20 |
27.2 |
81 |
8 |
6 |
2 |
5 |
2 |
1 |
0 |
|
|
11 |
 |
1.34 |
1.36 |
30.3 |
-1.40 |
-0.22 |
10.9 |
78 |
3 |
1 |
3 |
2 |
3 |
1 |
0 |
|
|
12 |
|
1.47 |
2.04 |
24.6 |
0.53 |
0.06 |
11.2 |
89 |
3 |
1 |
0 |
8 |
0 |
1 |
0 |
|
|
13 |
|
1.41 |
2.08 |
26.5 |
-2.73 |
-0.68 |
34.8 |
88 |
3 |
4 |
2 |
1 |
1 |
0 |
0 |
|
|
14 |
|
1.46 |
1.59 |
26.4 |
-1.15 |
-0.24 |
28.4 |
76 |
3 |
4 |
1 |
4 |
1 |
0 |
0 |
|
|
15 |
|
1.25 |
1.50 |
27.8 |
0.27 |
-0.04 |
14.2 |
87 |
3 |
2 |
0 |
7 |
1 |
0 |
0 |
|
|
16 |
|
1.15 |
1.33 |
26.0 |
-0.51 |
0.09 |
6.0 |
62 |
1 |
1 |
0 |
1 |
5 |
3 |
0 |
|
|
17 |
|
1.21 |
1.21 |
40.1 |
-1.69 |
-0.39 |
15.5 |
77 |
3 |
3 |
4 |
1 |
2 |
6 |
0 |
|
|
18 |
|
1.55 |
1.55 |
19.0 |
-1.56 |
-0.52 |
20.1 |
83 |
0 |
4 |
2 |
3 |
1 |
0 |
0 |
|
|
19 |
|
1.36 |
1.68 |
24.7 |
-1.05 |
-0.10 |
15.5 |
88 |
2 |
2 |
1 |
2 |
1 |
0 |
0 |
|
|
20 |
|
1.35 |
2.38 |
24.6 |
-2.41 |
-0.59 |
25.9 |
79 |
3 |
3 |
3 |
1 |
2 |
0 |
0 |
|
|
21 |
|
1.34 |
2.29 |
27.1 |
-2.44 |
-0.65 |
22.9 |
84 |
3 |
3 |
3 |
2 |
1 |
0 |
0 |
|
|
22 |
|
1.14 |
1.14 |
20.3 |
-0.79 |
-0.54 |
13.4 |
79 |
4 |
1 |
0 |
1 |
1 |
0 |
0 |
|
|
23 |
|
1.25 |
2.74 |
17.6 |
-0.98 |
-0.10 |
8.4 |
67 |
2 |
0 |
1 |
1 |
2 |
1 |
0 |
|
|
24 |
|
1.14 |
1.38 |
21.7 |
1.03 |
0.18 |
6.0 |
83 |
0 |
1 |
0 |
4 |
3 |
0 |
0 |
|
|
25 |
|
1.19 |
1.39 |
21.9 |
-0.38 |
-0.14 |
4.8 |
64 |
0 |
1 |
1 |
3 |
4 |
2 |
0 |
|
 |
26 |
|
1.14 |
1.14 |
17.4 |
1.45 |
0.33 |
4.4 |
79 |
1 |
1 |
1 |
5 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program