PDBsum entry 5g1d Go to PDB code:  Tunnel analysis for: 5g1d calculated with MOLE 2.0 PDB id 5g1d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.06 1.38 23.6 -1.10 -0.09 14.5 79 3 0 4 2 2 1 0   2 1.05 1.38 41.5 -1.28 -0.47 14.4 84 3 2 3 2 2 1 0   3 1.13 3.37 21.9 1.96 0.47 1.7 87 0 0 1 7 1 0 0   4 1.10 3.70 22.6 1.67 0.40 5.3 87 2 0 1 8 1 0 0   5 1.31 4.02 22.9 1.77 0.61 9.4 79 4 1 0 9 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.