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PDBsum entry 5fvc

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 5fvc calculated with MOLE 2.0 PDB id
5fvc
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.55 40.7 -0.51 -0.41 8.7 84 4 0 2 5 0 2 0  DC 2 K DC 3 K DC 5 K DC 6 K DC 7 K
2 1.40 1.47 52.7 -0.69 -0.32 11.9 84 6 2 2 6 1 2 0  DC 58 K DC 59 K DC 61 K DC 62 K DC 63 K
3 1.47 1.55 55.0 -1.50 -0.54 18.1 88 8 2 6 4 0 0 0  DC 38 K DC 40 K DC 41 K DC 42 K
4 1.41 1.50 58.6 -1.17 -0.41 14.0 85 8 4 4 5 1 0 0  DC 17 K DC 19 K DC 20 K DC 21 K DC 22 K DC 23 K
DC 24 K
5 1.61 3.45 68.3 -2.16 -0.49 21.7 86 8 4 7 2 0 2 0  DC 13 K DC 14 K DC 17 K
6 1.60 1.62 71.4 0.16 -0.01 7.3 88 3 1 8 8 3 0 0  
7 1.39 1.44 78.9 -1.00 -0.31 13.6 85 9 5 8 8 1 1 0  DC 9 K DC 10 K DC 12 K DC 13 K DC 14 K
8 1.62 3.44 91.4 -1.63 -0.50 15.4 87 8 3 14 8 0 0 0  DC 20 K DC 21 K DC 22 K DC 23 K DC 24 K
9 1.42 1.56 103.3 -1.43 -0.46 17.5 84 12 4 6 6 0 3 0  DC 45 K DC 47 K DC 48 K DC 49 K DC 50 K DC 51 K
DC 52 K
10 1.17 3.14 114.8 -0.32 -0.17 9.4 84 6 2 12 14 1 0 0  
11 1.60 1.62 115.4 -1.59 -0.41 16.1 89 7 3 14 7 3 0 0  DC 20 K DC 21 K DC 22 K DC 23 K DC 24 K
12 1.45 1.53 121.4 -1.36 -0.37 17.6 85 14 6 7 7 1 2 0  DC 9 K DC 10 K DC 12 K DC 13 K DC 14 K DC 17 K
13 1.20 1.86 133.2 -1.04 -0.34 14.2 87 8 4 13 10 1 0 0  DC 20 K DC 21 K DC 22 K DC 23 K DC 24 K
14 1.42 1.57 133.4 -1.78 -0.51 18.8 88 15 7 15 8 1 0 0  DC 9 K DC 10 K DC 12 K DC 13 K DC 14 K DC 20 K DC
21 K DC 22 K DC 23 K DC 24 K
15 1.36 3.20 137.4 -0.75 -0.20 14.2 85 7 4 12 14 1 1 0  DC 62 K
16 1.16 3.19 139.1 -0.24 -0.06 10.4 86 5 2 12 13 4 0 0  
17 1.44 1.46 146.5 -1.59 -0.37 19.3 85 13 7 8 7 1 3 0  DC 52 K DC 54 K DC 55 K DC 56 K DC 57 K DC 58 K
DC 59 K
18 1.19 1.95 158.4 -0.76 -0.26 14.5 86 12 7 13 14 2 0 0  DC 9 K DC 10 K DC 12 K DC 13 K DC 14 K
19 1.41 1.59 169.9 -1.56 -0.43 19.3 88 15 6 14 10 0 2 0  DC 23 K DC 24 K DC 26 K DC 27 K DC 28 K DC 34 K
DC 35 K DC 36 K
20 1.22 2.06 175.6 -0.53 -0.20 10.8 83 11 5 14 17 1 4 0  DC 13 K DC 14 K DC 17 K
21 1.35 1.51 194.9 -0.90 -0.29 14.1 85 17 5 15 17 1 2 0  DC 2 K DC 3 K DC 5 K DC 6 K DC 7 K DC 13 K DC 14
K DC 17 K
22 1.44 1.43 225.2 -1.18 -0.34 16.6 85 21 7 18 19 3 1 0  DC 2 K DC 3 K DC 5 K DC 6 K DC 7 K DC 58 K DC 59
K DC 61 K DC 62 K DC 63 K
23 1.29 1.79 288.2 -0.84 -0.23 14.2 84 22 6 20 25 3 2 0  DC 13 K DC 14 K DC 17 K DC 58 K DC 59 K DC 61 K
DC 62 K DC 63 K

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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