PDBsum entry 5frm Go to PDB code:  Tunnel analysis for: 5frm calculated with MOLE 2.0 PDB id 5frm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 3.74 32.5 1.08 0.77 2.5 73 1 1 3 5 6 2 0  GOL 1301 B 2 1.27 2.85 35.3 1.26 0.74 2.4 67 1 1 3 6 8 2 0  GOL 1301 B 3 1.20 3.64 37.3 1.19 0.88 2.7 71 1 1 3 5 8 2 0   4 1.22 2.86 37.5 1.12 0.80 2.8 70 1 1 3 6 7 2 0   5 1.21 3.54 41.3 0.75 0.94 4.3 70 3 0 2 5 9 1 0  GOL 1301 B 6 1.20 2.69 43.1 1.04 1.04 4.0 64 3 0 1 6 10 1 0   7 1.20 2.71 43.7 0.81 0.74 6.0 73 2 0 4 7 8 1 0   8 1.31 1.41 20.6 -2.00 -0.49 19.5 86 4 0 4 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.