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PDBsum entry 5fob

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Lipid binding protein PDB id
5fob
Contents
Protein chains
642 a.a.
902 a.a.
240 a.a.
Ligands
NAG-NAG-BMA-FUC
NAG-NAG
GOL ×24
Metals
IOD ×7
_CL ×5
_NA ×2
Waters ×207

References listed in PDB file
Key reference
Title Regulators of complement activity mediate inhibitory mechanisms through a common c3b-Binding mode.
Authors F.Forneris, J.Wu, X.Xue, D.Ricklin, Z.Lin, G.Sfyroera, A.Tzekou, E.Volokhina, J.C.Granneman, R.Hauhart, P.Bertram, M.K.Liszewski, J.P.Atkinson, J.D.Lambris, P.Gros.
Ref. Embo J, 2016, 35, 1133-1149. [DOI no: 10.15252/embj.201593673]
PubMed id 27013439
Abstract
Regulators of complement activation (RCA) inhibit complement-induced immune responses on healthy host tissues. We present crystal structures of human RCA (MCP, DAF, and CR1) and a smallpox virus homolog (SPICE) bound to complement component C3b. Our structural data reveal that up to four consecutive homologous CCP domains (i-iv), responsible for inhibition, bind in the same orientation and extended arrangement at a shared binding platform on C3b. Large sequence variations in CCP domains explain the diverse C3b-binding patterns, with limited or no contribution of some individual domains, while all regulators show extensive contacts with C3b for the domains at the third site. A variation of ~100° rotation around the longitudinal axis is observed for domains binding at the fourth site on C3b, without affecting the overall binding mode. The data suggest a common evolutionary origin for both inhibitory mechanisms, called decay acceleration and cofactor activity, with variable C3b binding through domains at sites ii, iii, and iv, and provide a framework for understanding RCA disease-related mutations and immune evasion.
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