spacer
spacer

PDBsum entry 5fi0

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5fi0 calculated with MOLE 2.0 PDB id
5fi0
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
26 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.99 2.03 28.5 -0.88 -0.23 11.8 72 3 2 2 4 1 2 0  
2 2.00 2.25 31.9 -1.31 -0.30 17.7 79 2 3 2 1 3 0 0  
3 1.64 1.72 35.4 -1.01 -0.22 16.7 77 6 3 1 5 2 1 0  
4 1.65 1.76 49.5 -1.40 -0.31 20.5 79 6 5 2 5 3 1 0  
5 3.27 4.99 50.0 -1.91 -0.40 20.0 84 5 4 8 5 0 3 0  
6 1.62 1.71 53.3 -1.40 -0.22 19.7 78 6 4 2 5 2 2 0  
7 1.73 2.16 64.8 -1.56 -0.39 18.1 83 7 6 6 7 2 1 0  
8 2.05 2.45 69.9 -1.79 -0.39 20.6 75 6 5 5 3 3 2 0  
9 1.94 2.96 70.3 -2.01 -0.49 23.9 80 5 6 4 1 3 1 0  
10 1.98 2.94 72.8 -1.76 -0.45 29.0 79 8 9 3 5 1 1 0  
11 1.86 2.62 74.9 -2.34 -0.50 27.0 82 8 9 7 3 1 2 0  
12 1.23 3.00 79.6 -2.66 -0.64 34.2 82 9 9 4 3 0 1 0  
13 1.71 1.80 81.2 -1.47 -0.28 19.7 75 10 6 4 6 3 3 0  
14 1.75 2.18 81.3 -1.32 -0.40 17.3 82 11 5 5 11 2 1 0  
15 2.61 3.17 81.8 -1.77 -0.49 16.4 85 6 5 12 10 1 1 0  
16 2.05 2.15 83.3 -1.63 -0.33 19.3 75 7 4 5 4 3 3 0  
17 1.23 3.00 86.6 -2.00 -0.44 28.6 80 9 8 2 6 1 2 0  
18 3.04 3.70 89.9 -1.60 -0.43 16.3 81 5 7 8 7 1 4 0  
19 1.23 2.98 107.5 -1.98 -0.43 24.0 80 10 7 5 5 1 2 0  
20 3.03 3.16 117.4 -2.30 -0.51 22.6 81 7 9 11 7 2 3 0  
21 1.18 1.46 122.3 -2.28 -0.52 27.3 81 11 11 7 5 1 3 0  
22 1.22 2.95 129.4 -2.07 -0.41 21.7 82 9 6 7 7 2 2 0  
23 1.34 1.34 32.1 -0.87 -0.19 18.4 91 4 1 2 4 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer