 |
PDBsum entry 5fi0
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5fi0 calculated with MOLE 2.0
|
PDB id
|
|
|
|
5fi0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
26 pores,
coloured by radius |
 |
23 pores,
coloured by radius
|
23 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.99 |
2.03 |
28.5 |
-0.88 |
-0.23 |
11.8 |
72 |
 |
3 |
2 |
2 |
4 |
1 |
2 |
0 |
 |
|
 |
 |
2 |
 |
2.00 |
2.25 |
31.9 |
-1.31 |
-0.30 |
17.7 |
79 |
2 |
3 |
2 |
1 |
3 |
0 |
0 |
|
 |
3 |
 |
1.64 |
1.72 |
35.4 |
-1.01 |
-0.22 |
16.7 |
77 |
6 |
3 |
1 |
5 |
2 |
1 |
0 |
|
 |
4 |
 |
1.65 |
1.76 |
49.5 |
-1.40 |
-0.31 |
20.5 |
79 |
6 |
5 |
2 |
5 |
3 |
1 |
0 |
|
 |
5 |
 |
3.27 |
4.99 |
50.0 |
-1.91 |
-0.40 |
20.0 |
84 |
5 |
4 |
8 |
5 |
0 |
3 |
0 |
|
 |
6 |
 |
1.62 |
1.71 |
53.3 |
-1.40 |
-0.22 |
19.7 |
78 |
6 |
4 |
2 |
5 |
2 |
2 |
0 |
|
 |
7 |
 |
1.73 |
2.16 |
64.8 |
-1.56 |
-0.39 |
18.1 |
83 |
7 |
6 |
6 |
7 |
2 |
1 |
0 |
|
 |
8 |
 |
2.05 |
2.45 |
69.9 |
-1.79 |
-0.39 |
20.6 |
75 |
6 |
5 |
5 |
3 |
3 |
2 |
0 |
|
 |
9 |
 |
1.94 |
2.96 |
70.3 |
-2.01 |
-0.49 |
23.9 |
80 |
5 |
6 |
4 |
1 |
3 |
1 |
0 |
|
 |
10 |
 |
1.98 |
2.94 |
72.8 |
-1.76 |
-0.45 |
29.0 |
79 |
8 |
9 |
3 |
5 |
1 |
1 |
0 |
|
 |
11 |
 |
1.86 |
2.62 |
74.9 |
-2.34 |
-0.50 |
27.0 |
82 |
8 |
9 |
7 |
3 |
1 |
2 |
0 |
|
 |
12 |
 |
1.23 |
3.00 |
79.6 |
-2.66 |
-0.64 |
34.2 |
82 |
9 |
9 |
4 |
3 |
0 |
1 |
0 |
|
 |
13 |
 |
1.71 |
1.80 |
81.2 |
-1.47 |
-0.28 |
19.7 |
75 |
10 |
6 |
4 |
6 |
3 |
3 |
0 |
|
 |
14 |
 |
1.75 |
2.18 |
81.3 |
-1.32 |
-0.40 |
17.3 |
82 |
11 |
5 |
5 |
11 |
2 |
1 |
0 |
|
 |
15 |
 |
2.61 |
3.17 |
81.8 |
-1.77 |
-0.49 |
16.4 |
85 |
6 |
5 |
12 |
10 |
1 |
1 |
0 |
|
 |
16 |
 |
2.05 |
2.15 |
83.3 |
-1.63 |
-0.33 |
19.3 |
75 |
7 |
4 |
5 |
4 |
3 |
3 |
0 |
|
 |
17 |
 |
1.23 |
3.00 |
86.6 |
-2.00 |
-0.44 |
28.6 |
80 |
9 |
8 |
2 |
6 |
1 |
2 |
0 |
|
 |
18 |
 |
3.04 |
3.70 |
89.9 |
-1.60 |
-0.43 |
16.3 |
81 |
5 |
7 |
8 |
7 |
1 |
4 |
0 |
|
 |
19 |
 |
1.23 |
2.98 |
107.5 |
-1.98 |
-0.43 |
24.0 |
80 |
10 |
7 |
5 |
5 |
1 |
2 |
0 |
|
 |
20 |
 |
3.03 |
3.16 |
117.4 |
-2.30 |
-0.51 |
22.6 |
81 |
7 |
9 |
11 |
7 |
2 |
3 |
0 |
|
 |
21 |
 |
1.18 |
1.46 |
122.3 |
-2.28 |
-0.52 |
27.3 |
81 |
11 |
11 |
7 |
5 |
1 |
3 |
0 |
|
 |
22 |
 |
1.22 |
2.95 |
129.4 |
-2.07 |
-0.41 |
21.7 |
82 |
9 |
6 |
7 |
7 |
2 |
2 |
0 |
|
 |
23 |
 |
1.34 |
1.34 |
32.1 |
-0.87 |
-0.19 |
18.4 |
91 |
4 |
1 |
2 |
4 |
1 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |