PDBsum entry 5fdz Go to PDB code:  Tunnel analysis for: 5fdz calculated with MOLE 2.0 PDB id 5fdz Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.22 30.6 -2.31 -0.60 21.9 79 4 2 2 2 3 0 0   2 1.44 1.49 16.7 -0.62 -0.09 10.6 71 1 2 1 1 2 0 1  5X0 903 B 3 1.42 1.47 18.9 -0.12 0.21 4.0 70 0 1 1 1 3 2 1  5X0 903 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.