PDBsum entry 5fdx Go to PDB code:  Tunnel analysis for: 5fdx calculated with MOLE 2.0 PDB id 5fdx Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.49 31.3 -0.09 -0.06 11.2 81 2 2 3 7 2 2 0  PEG 1004 B 2 1.15 1.47 47.2 -0.60 -0.32 10.0 88 1 1 5 9 1 1 0  5X1 1001 B PEG 1004 B 3 1.29 2.71 16.9 1.73 0.57 6.1 69 1 0 0 4 1 2 0   4 1.39 1.48 15.4 0.32 -0.02 10.3 71 1 1 0 2 1 1 0   5 1.23 2.63 19.0 1.34 0.44 7.8 70 2 2 0 4 1 1 0   6 1.10 1.10 16.1 0.41 0.36 2.0 75 0 0 1 5 3 0 0  PEG 1003 B 7 1.34 2.05 18.2 0.79 0.78 1.5 66 0 0 1 5 4 0 0  PEG 1003 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.