spacer
spacer

PDBsum entry 5fa5

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5fa5 calculated with MOLE 2.0 PDB id
5fa5
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.54 1.71 46.6 -1.45 -0.28 19.8 86 3 3 7 2 1 0 0  
2 2.20 2.41 53.5 -1.76 -0.59 18.0 89 4 6 5 5 0 1 0  
3 1.97 2.14 66.5 -1.61 -0.56 16.9 86 5 10 7 4 1 0 0  
4 1.88 3.34 70.9 -1.43 -0.52 20.3 89 6 8 6 5 0 1 1  
5 1.90 3.38 84.7 -1.22 -0.46 17.5 87 7 8 7 9 1 2 1  
6 1.90 2.76 86.2 -1.24 -0.46 17.7 86 8 11 8 8 1 3 1  
7 2.18 3.42 95.9 -2.57 -0.46 31.8 81 12 3 3 3 0 2 0  
8 1.21 2.58 152.0 -1.53 -0.35 20.4 85 9 4 3 4 2 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer